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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8420769_8421304_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8420769 - 8421304
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATCTCACAAATT
Flanking Amino Acid:
FVICLLILLISMAKSFCRNF
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
92.2
0.95
0.7
88.3
28.9
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
46
-0.2
2.2
68.1
42.9

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022050
8407344 - 8424043
16700
ENSAPLT00000013308
8407698 - 8424046
16349