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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8422936_8423935_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8422936 - 8423935
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAGCATAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTACTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATATCT
Flanking Amino Acid:
IKKFICLALQSFRRFRNSLS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.19
1.3
49.5
38.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.9
0.79
0.8
82.5
34
Minor 5ss
32.8
-2
4.3
45.8
44.1
Minor BPS
51.2
0.12
1.9
73.91
42.8

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022050
8407344 - 8424043
16700