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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8422967_8423969_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8422967 - 8423969
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
ACTGCTTGCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
ATTATGTGAATT
Flanking Amino Acid:
PETMKKKREIRSISLISFVL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
48.3
-0.1
1.7
57.5
42.7
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
48.3
-0
2.1
71.55
39.6

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013308
8407698 - 8424046
16349