About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8423960_8424016_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8423960 - 8424016
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAATACAG
5'SS Class:
major
3'SS Sequence:
CAGGTAAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AGACCATGAAAA
Flanking Amino Acid:
SMSTRERIKKFICLALQSF
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
50.7
45.7
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
47.8
-0.1
1
38
37.7
Minor 5ss
22.8
-3.1
3.8
30.7
36.3
Minor BPS
45.5
-0.3
1.7
53.58
36.9

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022050
8407344 - 8424043
16700