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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8438462_8438676_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8438462 - 8438676
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCGGGGACG
5'SS Class:
weak_major
3'SS Sequence:
CCGTCCCGCAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
AGCTCCTCACCG
Flanking Amino Acid:
WRGDGRSGERMFFPEEAHAA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.3
54
37.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
46.5
-0.2
1.6
48.8
34.2
Minor 5ss
16.7
-3.8
3.7
18.5
30.1
Minor BPS
49
-0.2
1.9
54.82
46

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875