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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8438904_8441554_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8438904 - 8441554
Intron Length:
2651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTACGGTG
5'SS Class:
major
3'SS Sequence:
TCATCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGCTCAGTAATT
Flanking Amino Acid:
EHALSIAEKRRDYQQANIKY
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
59.9
44.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.8
76.8
31.5
Minor 5ss
34.7
-1.7
3.5
47.2
48.3
Minor BPS
50.1
0.08
2.2
73.64
43.4

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875