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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8442503_8443023_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8442503 - 8443023
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CGTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
TYLKDLLTGTGFLETTSLFY
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.4
0.71
0.8
75.8
32.8
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875