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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8443170_8443642_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8443170 - 8443642
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
ATGTCTTGAATG
Flanking Amino Acid:
LALSLVWIIKRSVSGFKQSL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
77.7
0.62
0.8
77.1
31.6
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
60.7
0.2
1.5
62.35
40.2

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875