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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8445535_8446712_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8445535 - 8446712
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TACGGACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGTACAGAACG
Flanking Amino Acid:
ATAFSQEKSNTNLLVQYLPS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
66.6
0.37
1
54.9
44.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
49.1
-0.2
2
62.73
44.4

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875