Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8447892_8448406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8447892 - 8448406

Intron Length:

515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

CTTGCTTTTATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTTTCCTGACTT

Flanking Amino Acid:

ACGYNYELYPCWESAVGQEM

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.2

62.2

43.9

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

81.2

0.7

0.8

32.6

Minor 5ss

41.7

-0.9

2.9

58.6

45.7

Minor BPS

69.4

0.69

1.7

88.83

36.2

Associated Gene:

Gene:

TMC7

Ensembl Gene ID:

ENSAPLG00000012425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012984

8438396 - 8451270

12875