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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8449971_8450242_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8449971 - 8450242
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAGCAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
AFIPLGISIAHIPSSKACGP
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
64.6
40.3
Major BPS
48.2
-0.1
1.6
59.7
46.7
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
35.2
-1.7
3.3
49.2
41.2
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
TMC7
Ensembl Gene ID:
ENSAPLG00000012425
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012984
8438396 - 8451270
12875