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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8453808_8453976_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8453808 - 8453976
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTCAGCGCT
5'SS Class:
weak_major
3'SS Sequence:
GCACCGCGGCGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCAGCAC
U12 Branch Point Sequence:
GGCCCCGCAGCA
Flanking Amino Acid:
MTLDGINRAVV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.6
60.6
44.5
Major BPS
39.4
-0.6
1.3
39.4
40.4
Major PPT
40.4
-0.5
1.6
30.7
36.7
Minor 5ss
35.8
-1.6
3.3
48.1
41
Minor BPS
39.2
-0.8
2.2
46.92
42.3

Associated Gene:

Gene:
COQ7
Ensembl Gene ID:
ENSAPLG00000012343
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012865
8453803 - 8457699
3897