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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8455217_8455327_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8455217 - 8455327
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACCCCAATCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GGTACCCCAATC
Flanking Amino Acid:
PFWNVAGFVLGAGSALLGKK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
62.5
0.28
0.9
54.8
33.2
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
47.2
-0.2
1.9
58.41
39.9

Associated Gene:

Gene:
COQ7
Ensembl Gene ID:
ENSAPLG00000012343
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012865
8453803 - 8457699
3897