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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_84593_85631_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84593 - 85631
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
WNYSVTPALVVKPRAPRNLA
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.9
0.67
0.9
74.1
39.5
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015269
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015916
78964 - 93511
14548