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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8496939_8501905_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8496939 - 8501905
Intron Length:
4967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTCGTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTCGTTATAACA
Flanking Amino Acid:
GPFPAQTPAWLISSQNEDKD
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
70.7
0.47
1
65.8
38.6
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
48.8
-0
1.7
58.69
41.8

Associated Gene:

Gene:
SYT17
Ensembl Gene ID:
ENSAPLG00000012300
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012810
8495395 - 8527753
32359