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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8512048_8513837_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8512048 - 8513837
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGCTTGA
5'SS Class:
weak_major
3'SS Sequence:
CTTTTCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAATT
Flanking Amino Acid:
LWLGTTFCFGNEVELGELLL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.2
52.9
42.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.7
0.74
0.7
78.1
23.8
Minor 5ss
37.8
-1.4
3.1
40.4
45.8
Minor BPS
71.6
0.76
1.4
84.27
36.8

Associated Gene:

Gene:
SYT17
Ensembl Gene ID:
ENSAPLG00000012300
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037854
8511886 - 8527753
15868