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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_85784_86671_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85784 - 86671
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
GCCTGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ACTGCATAAACA
Flanking Amino Acid:
LYYREEFLFHQNVCVPENGK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
79.3
0.66
0.9
75.9
38
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
48.9
-0
2
62.53
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015269
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015916
78964 - 93511
14548