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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8580130_8582600_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8580130 - 8582600
Intron Length:
2471

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAATATCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTTCTCTTTATA
Flanking Amino Acid:
QLGPRTWFCGKTDSASADQD
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.9
41.9
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
88.3
0.86
0.6
84.3
23.8
Minor 5ss
32
-2.1
4.1
49.2
40.9
Minor BPS
64.6
0.45
1.6
76.23
34.4

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692