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Intron Name: Anas_platyrhynchos_platyrhynchos_15_8586848_8591363_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8586848 - 8591363

Intron Length:

4516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

CAAGAAATAATT

Flanking Amino Acid:

LATKDMRKSQERSLSYSDES

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

82.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

37.8

-1.4

3.4

49.4

46.6

Minor BPS

40.7

-0.6

1.9

53.31

41.4

Associated Gene:

Gene:

SMG1

Ensembl Gene ID:

ENSAPLG00000011764

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030382

8582400 - 8602640

20241

ENSAPLT00000012334

8580044 - 8637735

57692