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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8596211_8596911_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8596211 - 8596911
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTTGCTTTTACT
Flanking Amino Acid:
EKKAFSSLMQLVMTSLQSIL
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
86.9
0.83
0.7
85.6
28.6
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
69.5
0.7
1.7
87.77
37.8

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036531
8591372 - 8600002
8631
ENSAPLT00000030382
8582400 - 8602640
20241
ENSAPLT00000012334
8580044 - 8637735
57692