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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8597086_8599975_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8597086 - 8599975
Intron Length:
2890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAACATAT
5'SS Class:
weak_major
3'SS Sequence:
AGGACTTGTAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGAAAA
U12 Branch Point Sequence:
ACTTCTGTAACA
Flanking Amino Acid:
LHFLLVRKAVCVNDFQID*
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
63.4
37.4
Major BPS
49.7
-0
1.1
57
36.4
Major PPT
45.8
-0.2
1.7
45.9
45.2
Minor 5ss
47.7
-0.2
3
70.8
40.7
Minor BPS
61.5
0.36
2
73.1
39.3

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036531
8591372 - 8600002
8631