Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8600645_8601270_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8600645 - 8601270

Intron Length:

626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTTTGTATT

5'SS Class:

major

3'SS Sequence:

GTTTTATCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TGTGTTTTATCT

Flanking Amino Acid:

IISVLNLLTLIVEQINTKLP

Intron Amino Acid Position:

505

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.2

77.4

36.9

Major BPS

88.7

0.96

0.8

36.5

Major PPT

83.1

0.75

0.8

74.5

40.4

Minor 5ss

44.3

-0.6

2.5

58.3

40.2

Minor BPS

58.1

0.33

1.7

75.62

41.6

Associated Gene:

Gene:

SMG1

Ensembl Gene ID:

ENSAPLG00000011764

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012334

8580044 - 8637735

57692

ENSAPLT00000030382

8582400 - 8602640

20241