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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8602611_8603187_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8602611 - 8603187
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
IGNAKNSLIGMWALSPTVFA
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692