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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8605406_8605492_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8605406 - 8605492
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTTGGTGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ATGTTATGACCT
Flanking Amino Acid:
SSSLPDDLLQRCVDVCRVQL
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
72.1
0.5
1.1
66
44.5
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
47.1
-0.1
1.9
68.02
42.6

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692