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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8608023_8608840_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8608023 - 8608840
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATCT
5'SS Class:
major
3'SS Sequence:
GTATTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
EMKTNNSLSQGNELEVTIMM
Intron Amino Acid Position:
1065

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.7
0.58
0.9
73.7
41.5
Minor 5ss
39.6
-1.2
3.3
58
46.1
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692