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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8608996_8610041_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8608996 - 8610041
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAAATCACTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAAATATTAAAT
Flanking Amino Acid:
INSVAQQAEGRFEKATVEYQ
Intron Amino Acid Position:
1116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
57.3
0.16
1.1
58.8
41.5
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
48.9
-0
1.7
64.15
39

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692