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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8612921_8613629_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8612921 - 8613629
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TTTCTTGTGACA
Flanking Amino Acid:
NTVSNRLTSEDCLIPLFNDA
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
80.7
0.69
0.9
77.7
36.1
Minor 5ss
47.5
-0.2
2.8
64.7
46.6
Minor BPS
51.3
0.03
2
70.83
35.4

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692