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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8613751_8614362_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8613751 - 8614362
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTGTTTAGAA
Flanking Amino Acid:
YQNQLMEKLKEPTVPIKSHL
Intron Amino Acid Position:
1412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
80
0.75
1
78.6
31
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
52.9
0.09
2.1
72.33
39.9

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692