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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8615196_8616179_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8615196 - 8616179
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGTG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ACGTCATAAAAT
Flanking Amino Acid:
EYPRIESESTVNIGVGEPDF
Intron Amino Acid Position:
1590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.2
41.7
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
32
-2.1
3.8
46.1
49.1
Minor BPS
47.7
-0
2
64.67
45.4

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692