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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8616731_8617035_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8616731 - 8617035
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTT
Flanking Amino Acid:
QAVCRPAGIQDEDMTLQITE
Intron Amino Acid Position:
1685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.2
0.52
0.9
71.2
39.6
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
62.4
0.47
1.6
74.81
43.2

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692