About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8617267_8617364_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8617267 - 8617364
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
FTFLKLNAGQVPLDEDDPRL
Intron Amino Acid Position:
1762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.8
31.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.4
0.55
1
72.5
36.7
Minor 5ss
33.6
-1.9
3.1
44.2
43.6
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692