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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8620575_8621396_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8620575 - 8621396
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TTAACCTCAACC
Flanking Amino Acid:
PGSSWLPFKEVMLSLQQRAQ
Intron Amino Acid Position:
2074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.3
33
Major BPS
62.4
0.31
1
64
32.1
Major PPT
75.7
0.58
0.9
73.2
36
Minor 5ss
45.8
-0.4
2.9
64.9
46.4
Minor BPS
68.8
0.57
1.6
77.01
38.3

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692