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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8623828_8623915_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8623828 - 8623915
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTAAAG
Flanking Amino Acid:
HIDYNVCFEKGKSLRVPEKV
Intron Amino Acid Position:
2362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.5
0.64
1
79.1
33
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
69.2
0.46
1.5
73.28
38.8

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692