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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8625228_8625649_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8625228 - 8625649
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AGTTCTCTAAGT
Flanking Amino Acid:
LFSSRVAEIKVNWFKNRDEM
Intron Amino Acid Position:
2472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
33.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
79.3
0.66
0.8
77.3
36.4
Minor 5ss
35.1
-1.7
2.7
41.3
45.2
Minor BPS
55.4
0.25
2
75.83
40.7

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692