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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8625841_8626430_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8625841 - 8626430
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TTCATTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GCTTCATTAATT
Flanking Amino Acid:
VDHPSHTLQHRYSEHTQLQT
Intron Amino Acid Position:
2535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.5
0.6
1
74.6
39
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
70.5
0.72
1.6
81.98
39.5

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692