About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8626604_8626993_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8626604 - 8626993
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAAAGT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TAATTTTCAAAT
Flanking Amino Acid:
LQEISTQMDLGPPSYVPATA
Intron Amino Acid Position:
2593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.5
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
40.6
-1
3
58.1
46.1
Minor BPS
55.2
0.24
1.6
71.41
39.1

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692