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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8627274_8627966_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8627274 - 8627966
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
TIERCQDIFRKYEMQYAPQP
Intron Amino Acid Position:
2686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692