About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8628594_8629128_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8628594 - 8629128
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATACTT
5'SS Class:
major
3'SS Sequence:
GAATTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GATTCCTTATGT
Flanking Amino Acid:
LANGVYISLQELNSNFRQII
Intron Amino Acid Position:
2856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
73.5
37.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
65.4
0.35
1
59.5
41.3
Minor 5ss
32.5
-2
3.3
48
47.5
Minor BPS
61.3
0.43
1.9
78.09
43.8

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692