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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8630763_8630852_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8630763 - 8630852
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
TTATATTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
ETAFGLLIEKLNKMEIPVAW
Intron Amino Acid Position:
2982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74.4
0.55
1
73.2
41.5
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692