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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8631739_8632743_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8631739 - 8632743
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTTCTTAAAG
Flanking Amino Acid:
RVQLHIAMFQWQHEDLLISR
Intron Amino Acid Position:
3202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
84.7
0.78
0.9
86.6
25
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
77.9
0.74
1.4
80.39
35.1

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692