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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8632882_8633814_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8632882 - 8633814
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCCTCTCCCATT
Flanking Amino Acid:
QIEASIATVQEKLAALEASI
Intron Amino Acid Position:
3248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80
0.67
0.8
73.7
29.6
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
42.3
-0.5
2.1
59.92
44.5

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692