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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8633968_8634300_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8633968 - 8634300
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
CTTTGACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTGCTTTGACT
Flanking Amino Acid:
VLKESQRASQVTFLCSNIIH
Intron Amino Acid Position:
3299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.6
0.71
0.8
77.8
35.6
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
70.7
0.73
1.4
82.48
39.6

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692