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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8634930_8635374_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8634930 - 8635374
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
ATCTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAT
U12 Branch Point Sequence:
TTTTGCACATCT
Flanking Amino Acid:
VKHLLKAMAKDEEAALADGE
Intron Amino Acid Position:
3435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
63
0.32
1.2
63.6
40.3
Major PPT
82
0.72
0.9
76.7
36.8
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
46.5
-0.1
2.4
77.34
44.7

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692