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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8635587_8635786_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8635587 - 8635786
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGGACT
Flanking Amino Acid:
TLKELKTQSQSVYNNLVSFA
Intron Amino Acid Position:
3505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.69
0.9
73.5
41.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
61
0.43
1.8
84.92
35

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692