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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8636789_8636882_F

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8636789 - 8636882
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAAATTGAATT
Flanking Amino Acid:
KTARDPKTGKAVQERNSYAV
Intron Amino Acid Position:
3601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.2
0.61
0.9
74.6
36.4
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
48.9
-0
1.6
65.09
38.9

Associated Gene:

Gene:
SMG1
Ensembl Gene ID:
ENSAPLG00000011764
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012334
8580044 - 8637735
57692