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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8644535_8646166_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8644535 - 8646166
Intron Length:
1632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATTG
Flanking Amino Acid:
ALMSVVSFSFLMIYYLDPSV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
49.9
-0.1
1.9
60.79
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011729
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012214
8642674 - 8648237
5564