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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8646287_8647052_F

Intron Information:

Intron Rank:
3
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
8646287 - 8647052
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAAAAAAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
LAPRIFGSNKWTTEQQQRFH
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
49.2
-0
1.2
48.1
42
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011729
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012214
8642674 - 8648237
5564