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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8647898_8648118_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8647898 - 8648118
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAGTAAATAATT
Flanking Amino Acid:
VHNLFLTYLIVSFLLLFPGL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
47.6
-0.1
2
68.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011729
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012214
8642674 - 8648237
5564