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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8651139_8651749_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8651139 - 8651749
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTTCTGATCT
Flanking Amino Acid:
VRFLTVMMKHGYIGEFEIID
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.4
0.55
0.9
66.6
40.4
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
62.2
0.46
1.7
81.47
39.8

Associated Gene:

Gene:
RPS15A
Ensembl Gene ID:
ENSAPLG00000011588
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012077
8651006 - 8654729
3724