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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8651830_8653355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8651830 - 8653355
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTGTTTTATA
Flanking Amino Acid:
VVNLTGRLNKCGVISPRFDV
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.3
0.77
0.7
79.8
32.4
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
49.8
-0
2
66.19
40.9

Associated Gene:

Gene:
RPS15A
Ensembl Gene ID:
ENSAPLG00000011588
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012077
8651006 - 8654729
3724